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Kvazar 1.0 documentation
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A
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B
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C
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D
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E
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F
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G
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I
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K
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L
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M
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P
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R
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S
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T
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U
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V
A
AIREBO (class in kvazar.core.airebo)
,
[1]
B
BoxCell (class in kvazar.boxcell)
build_cells() (kvazar.boxcell.BoxCell method)
C
calc_neighbours() (kvazar.boxcell.BoxCell method)
check_pbc() (kvazar.diesel.Diesel method)
compare_topology_with() (kvazar.core.structure.Structure method)
compare_with() (kvazar.core.structure.Structure method)
compute() (kvazar.core.mm.MM method)
(kvazar.core.tb.TB method)
compute_ebond() (kvazar.core.tb.TB method)
compute_erep() (kvazar.core.tb.TB method)
compute_i() (kvazar.core.mm.MM method)
compute_ij() (kvazar.core.mm.MM method)
copy() (kvazar.core.structure.Structure method)
D
Diesel (class in kvazar.diesel)
dissipative_step() (kvazar.diesel.Diesel method)
E
ensure_forces() (kvazar.core.tb.TB method)
F
FileManager (class in kvazar.fileman)
G
get_forces() (kvazar.diesel.Diesel method)
get_full_links() (kvazar.core.structure.Structure method)
get_neighbours() (kvazar.core.structure.Structure method)
get_tors_sequences() (kvazar.core.structure.Structure method)
getsubstr() (kvazar.core.structure.Structure method)
I
init_cutoff() (kvazar.core.airebo.AIREBO method)
,
[1]
(kvazar.core.martini.MARTINI method)
(kvazar.diesel.Diesel method)
K
kvazar.boxcell (module)
kvazar.core.airebo (module)
,
[1]
kvazar.core.martini (module)
kvazar.core.mm (module)
kvazar.core.structure (module)
kvazar.core.tb (module)
kvazar.diesel (module)
kvazar.fileman (module)
kvazar.record (module)
L
leapfrog_berendsen_step() (kvazar.diesel.Diesel method)
leapfrog_nosehoover_step() (kvazar.diesel.Diesel method)
leapfrog_step() (kvazar.diesel.Diesel method)
load_force_function() (kvazar.core.tb.TB method)
load_tb_functions() (kvazar.core.tb.TB method)
loadForceFunction() (kvazar.core.mm.MM method)
loadMMFunctions() (kvazar.core.mm.MM method)
M
MARTINI (class in kvazar.core.martini)
MM (class in kvazar.core.mm)
P
preprocessing() (kvazar.core.airebo.AIREBO method)
,
[1]
(kvazar.core.martini.MARTINI method)
(kvazar.core.mm.MM method)
(kvazar.core.tb.TB method)
R
Record (class in kvazar.record)
run() (kvazar.diesel.Diesel method)
S
simulation() (kvazar.diesel.Diesel method)
Structure (class in kvazar.core.structure)
T
TB (class in kvazar.core.tb)
time_to_update() (kvazar.boxcell.BoxCell method)
tors_dfs() (kvazar.core.structure.Structure method)
U
update_cutoff() (kvazar.core.airebo.AIREBO method)
,
[1]
(kvazar.core.martini.MARTINI method)
update_neighbours() (kvazar.core.structure.Structure method)
update_prev_coords() (kvazar.boxcell.BoxCell method)
update_tb_links() (kvazar.core.tb.TB method)
use_pbc() (kvazar.diesel.Diesel method)
V
velocity_verlet_step() (kvazar.diesel.Diesel method)
verlet_step() (kvazar.diesel.Diesel method)
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