Index

A | B | C | D | E | F | G | I | K | L | M | P | R | S | T | U | V

A

AIREBO (class in kvazar.core.airebo), [1]

B

BoxCell (class in kvazar.boxcell)
build_cells() (kvazar.boxcell.BoxCell method)

C

calc_neighbours() (kvazar.boxcell.BoxCell method)
check_pbc() (kvazar.diesel.Diesel method)
compare_topology_with() (kvazar.core.structure.Structure method)
compare_with() (kvazar.core.structure.Structure method)
compute() (kvazar.core.mm.MM method)
(kvazar.core.tb.TB method)
compute_ebond() (kvazar.core.tb.TB method)
compute_erep() (kvazar.core.tb.TB method)
compute_i() (kvazar.core.mm.MM method)
compute_ij() (kvazar.core.mm.MM method)
copy() (kvazar.core.structure.Structure method)

D

Diesel (class in kvazar.diesel)
dissipative_step() (kvazar.diesel.Diesel method)

E

ensure_forces() (kvazar.core.tb.TB method)

F

FileManager (class in kvazar.fileman)

G

get_forces() (kvazar.diesel.Diesel method)
get_full_links() (kvazar.core.structure.Structure method)
get_neighbours() (kvazar.core.structure.Structure method)
get_tors_sequences() (kvazar.core.structure.Structure method)
getsubstr() (kvazar.core.structure.Structure method)

I

init_cutoff() (kvazar.core.airebo.AIREBO method), [1]
(kvazar.core.martini.MARTINI method)
(kvazar.diesel.Diesel method)

K

kvazar.boxcell (module)
kvazar.core.airebo (module), [1]
kvazar.core.martini (module)
kvazar.core.mm (module)
kvazar.core.structure (module)
kvazar.core.tb (module)
kvazar.diesel (module)
kvazar.fileman (module)
kvazar.record (module)

L

leapfrog_berendsen_step() (kvazar.diesel.Diesel method)
leapfrog_nosehoover_step() (kvazar.diesel.Diesel method)
leapfrog_step() (kvazar.diesel.Diesel method)
load_force_function() (kvazar.core.tb.TB method)
load_tb_functions() (kvazar.core.tb.TB method)
loadForceFunction() (kvazar.core.mm.MM method)
loadMMFunctions() (kvazar.core.mm.MM method)

M

MARTINI (class in kvazar.core.martini)
MM (class in kvazar.core.mm)

P

preprocessing() (kvazar.core.airebo.AIREBO method), [1]
(kvazar.core.martini.MARTINI method)
(kvazar.core.mm.MM method)
(kvazar.core.tb.TB method)

R

Record (class in kvazar.record)
run() (kvazar.diesel.Diesel method)

S

simulation() (kvazar.diesel.Diesel method)
Structure (class in kvazar.core.structure)

T

TB (class in kvazar.core.tb)
time_to_update() (kvazar.boxcell.BoxCell method)
tors_dfs() (kvazar.core.structure.Structure method)

U

update_cutoff() (kvazar.core.airebo.AIREBO method), [1]
(kvazar.core.martini.MARTINI method)
update_neighbours() (kvazar.core.structure.Structure method)
update_prev_coords() (kvazar.boxcell.BoxCell method)
update_tb_links() (kvazar.core.tb.TB method)
use_pbc() (kvazar.diesel.Diesel method)

V

velocity_verlet_step() (kvazar.diesel.Diesel method)
verlet_step() (kvazar.diesel.Diesel method)